Blog
-
Who's (Not) Afraid of the Batch Effect Boogeyman?
How do people deal with batch effects? Batch effects encompass all the ways t... -
Joint Calling and the Batch Effect Boogeyman
What happens if you don’t joint call all your samples together? Why do people... -
Masked reference genomes
The work presented here includes significant contributions from Pankaj Vats a... -
Introducing GATK "Biggest Practices" for Joint Calling Supersized Cohorts
DNA sequencing continues to get cheaper and cheaper as time goes on, which me... -
⚙️ GATK 4.3 release
The latest GATK release came out a few weeks ago, with changes corresponding... -
Introducing NVIDIA's NVScoreVariants, a new deep learning tool for filtering variants
If you know only one thing about NVIDIA, it's probably that they manufacture... -
Hacking GATK to reduce your cloud costs
When it comes to research, time is money. And that couldn't be any more liter... -
GenotypeGVCFs and the death of the dot (obsolete as of GATK 4.6.0.0)
⚠️ NOTE ⚠️ This article describes behavior present in GATK versions 4.2.3.0 t... -
Please update your GATK - Important information about GATK 4.2.6.1
🚨 If you are using GATK version 4.2.5.0, please update to the newest releas... -
GATK on the cloud, with Terra
We've talked about Terra here before, but we thought it might be useful to re... -
Important: GATK version update required to address Log4j security vulnerability
We have an important update regarding the safety of running GATK. As you may ... -
Full release of open-source DRAGEN-GATK 1.0
It's finally here! We've been talking about it (on the old, now archived blog... -
Introducing DRAGMAP, the new genome mapper in DRAGEN-GATK
As you may know from previous posts, we’ve been working with the DRAGEN team ... -
⚙️ GATK 4.2.3.0 release
The latest GATK release is out, with changes corresponding to the period of ... -
⚙️ GATK 4.2.2.0 release
The latest GATK release is out, with changes corresponding to the period of ... -
⚙️ GATK 4.2.1.0 release
The latest GATK release is out, with changes corresponding to the period of ... -
Introducing GATK for Microbes
Being able to accurately identify mutations in microbial genomes is an essent... -
From GATK 4.1 to 4.2: Two years of updates in a nutshell
It’s been over two years since we released GATK 4.1, so now is definitely the... -
⚙️ GATK 4.2 release
The latest GATK release is out, with changes corresponding to the period of ... -
New Year update — GATK takes on 2021
Well folks, this new year is off to a heck of a start. I don't know who needs... -
⚙️ GATK 4.1.9.0 release
The latest GATK release is out, with changes corresponding to the period of ... -
Mutect2 Webinar Announcement and A Call for Questions From Our Community
Do you miss the in-person GATK workshops we used to host back in pre-pandemic... -
DRAGEN-GATK update: Upcoming webinar and pipeline release timeframe
A year ago this month, we announced the start of our collaboration with the D... -
Downsampling in GATK
By Takuto Sato, Computational Methods Team, Data Sciences Platform __________... -
⚙️ GATK 4.1.8.0 release
The latest GATK release is out, with changes corresponding to the period of ... -
Genomics in the Cloud: Origins
In my last blog post, I introduced the book that Brian O'Connor and I recentl... -
Introducing Genomics in the Cloud, ie "The GATK book"
I always wince a bit at the phrase "we are thrilled to announce bla bla blah"... -
Detecting sample swaps with Picard tools
By Yossi Farjoun, Associate Director of computational research methods in the... -
GATK Workshops: Cancellations & Rescheduling
In light of recent developments regarding the ongoing COVID-19 outbreaks, we...