Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Detecting sample swaps with Picard tools Follow

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    Yossi Farjoun

    We finally got approval to make public the full "haplotype database" that we use in production. These are designed for human samples:




    Note that some assay information is included in these files and we are allowed to say that at the Broad we were using the sites listed under "fluidigm_96plex_v1".


    I hope this is useful for someone.



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