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GATK Showcase in Terra
Check out these fully configured workspaces to test drive the Best Practices pipelines and workshop tutorials with zero installation required!
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- Search using the search box at the top of the page, e.g. using the error message.
- Try the latest version of tools.
- Current Version: 188.8.131.52.
- When reporting a problem, include tool and Java versions.
- Tell us whether you are following GATK Best Practices.
- Include relevant details, e.g. platform, DNA- or RNA-Seq, WES (+capture kit) or WGS (PCR-free or PCR+), paired- or single-end, read length, expected average coverage, somatic data, etc.
- For tool errors, include the error stacktrace as well as the exact command.
- For format issues, include the result of running ValidateSamFile for BAMs or ValidateVariants for VCFs.
- For weird results, include an illustrative example, e.g. attach IGV screenshots.
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