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Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

  1. GATK
  2. Getting Started
  3. Computing Platforms

Computing Platforms

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  • GATK on local HPC infrastructure
    GATK can be deployed on high performance computing (HPC) systems using an HPC...
  • GATK on the cloud with Terra
    Terra (formerly called FireCloud) is an open platform for secure and scalable...
  • GATK on Alibaba Cloud
    Alibaba Cloud, the largest cloud provider in China, has developed open-source...
  • Pipelining GATK with WDL and Cromwell
    We aim to provide the research community with a range of options for running ...
  • GATK on Google Cloud
    At this time we are able to offer two services for running WDL workflows on G...
  • GATK on Amazon Web Services
    We are soon adding support for running Cromwell on AWS Batch, integrating wit...

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