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Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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  • New Year update — GATK takes on 2021
    Well folks, this new year is off to a heck of a start. I don't know who needs...
  • GATK 4.1.9.0 release
    The latest GATK release is out, with changes corresponding to the period of J...
  • Mutect2 Webinar Announcement and A Call for Questions From Our Community
    Do you miss the in-person GATK workshops we used to host back in pre-pandemic...
  • DRAGEN-GATK update: Upcoming webinar and pipeline release timeframe
    A year ago this month, we announced the start of our collaboration with the D...
  • Downsampling in GATK
    By Takuto Sato, Computational Methods Team, Data Sciences Platform __________...
  • GATK 4.1.8.0 release
    The latest GATK release is out, with changes corresponding to the period of A...
  • Genomics in the Cloud: Origins
    In my last blog post, I introduced the book that Brian O'Connor and I recentl...
  • Introducing Genomics in the Cloud, ie "The GATK book"
    I always wince a bit at the phrase "we are thrilled to announce bla bla blah"...
  • Detecting sample swaps with Picard tools
    By Yossi Farjoun, Associate Director of computational research methods in the...
  • GATK on the cloud with Terra
    We've talked about Terra here before, but we thought it might be useful to re...
  • GATK Workshops: Cancellations & Rescheduling
    In light of recent developments regarding the ongoing COVID-19 outbreaks, we ...
  • DRAGEN-GATK Update: Let's get more specific
    This post was written in collaboration with Severine Catreux (Illumina DRAGEN...
  • Welcome to the new home of GATK
    Happy New Year, everyone! What better time to roll out something new than the...
  • Catching up with the times: GATK is moving to a new web home
    A brief history When GATK was first released around 2010, its documentation l...

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