Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Variant Filtration error "Number format exception"


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    Genevieve Brandt (she/her)

    Hi Sheetal Shetty, it looks like the tool is expecting a number but there is a period. (java.lang.NumberFormatException: For input string: "."). To troubleshoot this issue you can run ValidateVariants or look through your filters to make sure they contain the correct values to be evaluated.

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