Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

PlotDenoisedCopyRatios Error



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    Gökalp Çelik

    Hi Indrani Datta

    This error is related to the R version that is in effect with your environment. PlotDenoisedCopyRatios is expecting an older version of R and r-optparse package however new versions of the r-optparse package does not use the args flag. 

    The required versions are listed below. 

    r-base                    3.6.2
    r-optparse                1.6.4

    I hope this helps. 

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    Indrani Datta

    Thank you.


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