Filter out flow reads that have invalid TP values

Category Read Filters

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Overview

A read filter to test if the TP values for each hmer in a flow based read form are wihin the allowed range (being the possible lengths of hmers - maxHmer)

FlowBasedTPAttributeValidReadFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s)	Default value	Summary
Optional Tool Arguments
--read-filter-max-hmer	12	maxHmer to use for testing in the filter

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

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--read-filter-max-hmer

maxHmer to use for testing in the filter

int  12  [ [ -∞  ∞ ] ]

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GATK version 4.3.0.0 built at Wed, 12 Oct 2022 21:04:44 -0400.