Tool Index
4.6.0.0 - Current
-
* Tool Documentation Index
... -
AccumulateQualityYieldMetrics (Picard)
Combines multiple QualityYieldMetrics files into a single file.... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddFlowSNVQuality (EXPERIMENTAL)
Add SNV Quality to the flow-based CRAM Category Flow B... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to...
4.5.0.0
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* Tool Documentation Index
... -
AccumulateQualityYieldMetrics (Picard)
Combines multiple QualityYieldMetrics files into a single file.... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th...
4.4.0.0
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* Tool Documentation Index
... -
AccumulateQualityYieldMetrics (Picard)
Combines multiple QualityYieldMetrics files into a single file.... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th...
4.3.0.0
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* Tool Documentation Index
... -
AccumulateQualityYieldMetrics (Picard)
Combines multiple QualityYieldMetrics files into a single file.... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th...
4.2.6.1
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* Tool Documentation Index
... -
AccumulateQualityYieldMetrics (Picard)
Combines multiple QualityYieldMetrics files into a single file.... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th...
4.2.6.0
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* Tool Documentation Index
... -
AccumulateQualityYieldMetrics (Picard)
Combines multiple QualityYieldMetrics files into a single file.... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th...
4.2.5.0
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.2.4.1
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.2.4.0
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.2.3.0
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.2.2.0
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.2.1.0
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.2.0.0
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.9.0
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.8.1
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.8.0
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* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.7.0
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* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to de... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.6.0
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* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to det... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.5.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.4.1
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.4.0
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* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddCommentsToBam (Picard)
(EXPERIMENTAL) Processes reads from a MITESeq or other saturati... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.3.0
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* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.2.0
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* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.1.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.1.0.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.12.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.11.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to dete... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.10.1
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to det... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.10.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to det... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.9.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.8.1
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.8.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.7.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.6.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.5.2
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to dete... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.5.1
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to d... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.5.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to det... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single f... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a cop... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. Th... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the conten...
4.0.4.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to detec... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single file. Th... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a copy of the... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to every a... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. This tool ... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the contents of th...
4.0.3.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to detec... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single file. Th... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a copy of the... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to every a... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. This tool ... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the contents of th...
4.0.2.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to detec... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single file. Th... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a copy of the... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to every a... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. This tool ... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the contents of th...
4.0.1.2
-
* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single file. Th... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a copy of the... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to every a... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. This tool ... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the contents of th...
4.0.1.1
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to detec... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single file. Th... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a copy of the... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to every a... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. This tool ... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the contents of th...
4.0.1.0
-
* Tool Documentation Index
Copy Number Variant Discovery Tools that analyze read coverage to detec... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single file. Th... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a copy of the... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to every a... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. This tool ... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the contents of th...
4.0.0.0
-
* Tool Documentation Index
... -
AccumulateVariantCallingMetrics (Picard)
Combines multiple Variant Calling Metrics files into a single file. Th... -
AddCommentsToBam (Picard)
Adds comments to the header of a BAM file.This tool makes a copy of the... -
AddOATag (Picard)
This tool takes in an aligned SAM or BAM and adds the OA tag to every a... -
AddOrReplaceReadGroups (Picard)
Assigns all the reads in a file to a single new read-group. This tool ... -
AlignmentAgreesWithHeaderReadFilter
Filters out reads where the alignment does not match the contents of th...
Note that the information in this documentation guide is targeted at end-users. For developers, the source code and related resources are available on GitHub.