Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Aisha Shah

    This tool is available internally to be used with GATK haplotype Caller. But I don't see it as an independent tool in GATK tools list. Is it possible to use it independently?

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