Keep only reads with a valid alignment start
Category Read Filters
OverviewKeep only reads with a valid alignment start (POS larger than 0) or is unmapped.
See MappedReadFilter for criteria defining an unmapped read.
See these additional references.
GATK version 188.8.131.52-SNAPSHOT built at Mon, 7 Feb 2022 11:18:01 -0500.
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