Keep only reads for a given sample
Category Read Filters
OverviewKeep only reads for a given sample.
Matching is done by case-sensitive exact match.
SampleReadFilter specific arguments
This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.
|Argument name(s)||Default value||Summary|
||The name of the sample(s) to keep, filtering out all others|
Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.
--sample / -sample
The name of the sample(s) to keep, filtering out all others
R Set[String] 
GATK version 184.108.40.206-SNAPSHOT built at Tue, 4 Jan 2022 16:50:23 -0800.