Keep only reads containing good CIGAR string
Category Read Filters
OverviewKeep only reads containing good CIGAR strings.
Good CIGAR strings have the following properties:
- Valid according to the SAM specifications.
- Does not start or end with deletions (with or without preceding clips).
- Does not have consecutive deletion/insertion operators.
GATK version 188.8.131.52-SNAPSHOT built at Tue, 4 Jan 2022 16:50:23 -0800.
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