Keep only reads from the specified read group

Category Read Filters

---

Overview

Keep only reads from the specified read group. Discards reads lacking an RG tag.

Matching is done by case-sensitive exact match.

ReadGroupReadFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s)	Default value	Summary
Required Arguments
--keep-read-group		The name of the read group to keep

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

---

--keep-read-group

The name of the read group to keep

R String  null

---

Return to top

---

GATK version 4.2.4.1-SNAPSHOT built at Tue, 4 Jan 2022 16:50:23 -0800.