Filter out unmapped reads
Category Read Filters
Overview
Filter out unmapped reads.Unmapped reads are defined by three criteria:
- SAM flag value 0x4
- An asterisk for reference name or RNAME (column 3 of a SAM record)
- A zero value for leftmost mapping position for POS (column 4 of SAM record)
GATK version 4.2.3.0-SNAPSHOT built at Mon, 8 Nov 2021 14:59:32 -0800.
0 comments
Please sign in to leave a comment.