Filter out reads with matching platform unit attribute

Category Read Filters

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Overview

Filter out reads where the the platform unit attribute (PU tag) contains the given string.

Note: Matching is done by exact case-sensitive text matching.

PlatformUnitReadFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s)	Default value	Summary
Required Arguments
--black-listed-lanes		Platform unit (PU) to filter out

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

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--black-listed-lanes

Platform unit (PU) to filter out

R Set[String]  []

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GATK version 4.2.2.0-SNAPSHOT built at Thu, 19 Aug 2021 09:49:28 -0700.