Keep only reads for a given sample

Category Read Filters

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Overview

Keep only reads for a given sample.

Matching is done by case-sensitive exact match.

SampleReadFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s)	Default value	Summary
Required Arguments
--sample		The name of the sample(s) to keep, filtering out all others

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

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--sample / -sample

The name of the sample(s) to keep, filtering out all others

R Set[String]  []

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GATK version 4.2.2.0-SNAPSHOT built at Thu, 19 Aug 2021 09:49:28 -0700.