Keep only reads with a valid alignment start
Category Read Filters
OverviewKeep only reads with a valid alignment start (POS larger than 0) or is unmapped.
See MappedReadFilter for criteria defining an unmapped read.
See these additional references.
GATK version 184.108.40.206-SNAPSHOT built at Mon, 22 Feb 2021 13:44:49 -0800.
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