Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

NotProperlyPairedReadFilter Follow

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    I want to use the tools NotProperlyPairedReadFilter ,and I don't find the usage .So  I try to run it by the regular way (./gatk  NotProperlyPairedReadFilter ,output A USER ERROR has occurred: 'NotProperlyPairedReadFilter' is not a valid command) ,so can you give me an example to use it ,Thankyou very much. 

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