Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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NonChimericOriginalAlignmentReadFilter Follow

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GATK Team

Filters reads whose original alignment was chimeric.

Category Read Filters

Overview

If original alignment and mate original alignment tags exist, filter reads that were originally chimeric (mates were on different contigs).

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GATK version 4.2.0.0-SNAPSHOT built at Mon, 22 Feb 2021 13:44:49 -0800.

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