Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

GoodCigarReadFilter Follow

1 comment

  • Avatar

    Can you explain what is a good cigar string more specifically? 150M is a good cigar, then what about 10S100M40H? I did not find a good explaination in SAM specifications. Hope your response

    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk