Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Articles in this section

See more

ReadLengthEqualsCigarLengthReadFilter Follow

Avatar
GATK Team
  • Updated

Filter out reads where the read and CIGAR do not match in length

Category Read Filters

Overview

Filter out reads where the read and CIGAR do not match in length.

Note: unmapped reads pass this filter. See MappedReadFilter for criteria defining an unmapped read.

Additional references

See these additional references.

Return to top

GATK version 4.1.8.1-SNAPSHOT built at Sun, 2 Aug 2020 22:56:07 -0400.

0 comments

Please sign in to leave a comment.

Powered by Zendesk