Keep only reads containing good CIGAR string
Category Read Filters
Overview
Keep only reads containing good CIGAR strings.Good CIGAR strings have the following properties:
- Valid according to the SAM specifications.
- Does not start or end with deletions (with or without preceding clips).
- Does not have consecutive deletion/insertion operators.
GATK version 4.1.7.0-SNAPSHOT built at Fri, 24 Apr 2020 12:01:12 -0400.
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