Keep only reads whose length is within a certain range

Category Read Filters

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Overview

Keep only reads whose length is ≥ min value and ≤ max value.

ReadLengthReadFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s)	Default value	Summary
Required Arguments
--max-read-length	null	Keep only reads with length at most equal to the specified value
Optional Tool Arguments
--min-read-length	1	Keep only reads with length at least equal to the specified value

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

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--max-read-length / NA

Keep only reads with length at most equal to the specified value

R Integer  null

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--min-read-length / NA

Keep only reads with length at least equal to the specified value

int  1  [ [ -∞  ∞ ] ]

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GATK version 4.1.6.0-SNAPSHOT built at Thu, 2 Apr 2020 14:54:17 -0400.