Keep only reads whose strand is as specified

Category Read Filters

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Overview

Keep only reads whose strand is either forward (not 0x10) or reverse (0x10), as specified.

By default the filter keeps only forward reads (not 0x10).

ReadStrandFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s)	Default value	Summary
Required Arguments
--keep-reverse-strand-only	null	Keep only reads on the reverse strand

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

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--keep-reverse-strand-only / NA

Keep only reads on the reverse strand

R Boolean  null

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GATK version 4.1.6.0-SNAPSHOT built at Thu, 2 Apr 2020 14:54:17 -0400.