Filter out reads with matching platform unit attribute
Category Read Filters
OverviewFilter out reads where the the platform unit attribute (PU tag) contains the given string.
Note: Matching is done by exact case-sensitive text matching.
PlatformUnitReadFilter specific arguments
This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.
|Argument name(s)||Default value||Summary|
||||Platform unit (PU) to filter out|
Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.
--black-listed-lanes / NA
Platform unit (PU) to filter out
R Set[String] 
GATK version 184.108.40.206-SNAPSHOT built at Thu, 2 Apr 2020 14:54:17 -0400.