Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Articles in this section

See more

NotProperlyPairedReadFilter Follow

Avatar
GATK Team

Keep only paired reads that are not properly paired

Category Read Filters

Overview

Keep only paired reads that are marked as not properly paired (0x1 and !0x2). Removes unpaired reads.

Return to top

GATK version 4.1.6.0-SNAPSHOT built at Thu, 2 Apr 2020 14:54:17 -0400.

0 comments

Please sign in to leave a comment.

Powered by Zendesk