Filter out reads where the read and CIGAR do not match in length
Category Read Filters
OverviewFilter out reads where the read and CIGAR do not match in length.
Note: unmapped reads pass this filter. See MappedReadFilter for criteria defining an unmapped read.
See these additional references.
GATK version 126.96.36.199-SNAPSHOT built at Wed, 4 Mar 2020 13:47:07 -0500.