Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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NotSupplementaryAlignmentReadFilter Follow

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GATK Team
  • Updated

Filter out reads representing supplementary alignments

Category Read Filters

Overview

Filter out reads representing supplementary alignments (0x800).

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GATK version 4.0.1.0 built at 27-28-2019 10:28:59.

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