Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Articles in this section

See more

FirstOfPairReadFilter Follow

Avatar
GATK Team

Keep only reads that are first of pair

Category Read Filters

Overview

Keep only reads that are first of pair (0x1 and 0x40).

Return to top

GATK version 4.0.8.0 built at 25-51-2019 10:51:39.

0 comments

Please sign in to leave a comment.

Powered by Zendesk