List of samples that are not homozygous reference at a variant site (Samples)
Category Variant Annotations
Overview
List samples that are non-reference at a given variant siteThe output is a list of the samples that are genotyped as having one or more variant alleles. This allows you to easily determine which samples are non-reference (heterozygous or homozygous-variant) and compare them to samples that are homozygous-reference. This annotation is particularly useful for large cohorts where the genotype fields are difficult to manually match with sample names.
GATK version 4.1.3.0 built at Sat, 23 Nov 2019 16:20:54 -0500.
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