Keep only reads containing good CIGAR string
Category Read Filters
OverviewKeep only reads containing good CIGAR strings.
Good CIGAR strings have the following properties:
- Valid according to the SAM specifications.
- Does not start or end with deletions (with or without preceding clips).
- Does not have consecutive deletion/insertion operators.
GATK version 184.108.40.206 built at 25-30-2019 05:30:15.
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