Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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ReadLengthEqualsCigarLengthReadFilter Follow

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GATK Team
  • Updated

Filter out reads where the read and CIGAR do not match in length

Category Read Filters

Overview

Filter out reads where the read and CIGAR do not match in length.

Note: unmapped reads pass this filter. See MappedReadFilter for criteria defining an unmapped read.

Additional references

See these additional references.

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GATK version 4.6.2.0 built at Sun, 13 Apr 2025 15:34:15 -0400.

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