Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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RrbsCpgDetailMetrics Follow

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GATK Team
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Metrics

Category Metrics

Overview

Holds information about CpG sites encountered for RRBS processing QC @author jgentry

This table summarizes the values that are specific to this metric.

Metric Summary
SEQUENCE_NAME
Sequence the CpG is seen in
POSITION
Position within the sequence of the CpG site
TOTAL_SITES
Number of times this CpG site was encountered
CONVERTED_SITES
Number of times this CpG site was converted (TG for + strand, CA for - strand)
PCT_CONVERTED
CpG CONVERTED_BASES / CpG TOTAL_BASES (fraction)

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GATK version 4.5.0.0 built at Tue, 9 Jan 2024 14:37:17 -0500.

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