Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Articles in this section

See more

NonChimericOriginalAlignmentReadFilter Follow

Avatar
GATK Team

Filters reads whose original alignment was chimeric.

Category Read Filters

Overview

If original alignment and mate original alignment tags exist, filter reads that were originally chimeric (mates were on different contigs).

Return to top

GATK version 4.5.0.0 built at Tue, 9 Jan 2024 14:37:17 -0500.

Related articles

0 comments

Please sign in to leave a comment.

Powered by Zendesk