Troubleshooting GATK4 Issues

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Glossary

  • GATKReport and gsalib
    A GATKReport is simply a text document that contains well-formatted, easy to ...
  • Fisher’s Exact Test
    Overview Fisher’s Exact Test is a statistical test that is used to analyze c...
  • Reference genome
    This document covers the general motivation behind the use of genome referenc...
  • GenomicsDB
    GenomicsDB is a datastore format developed by our collaborators at Intel to s...
  • uBAM - Unmapped BAM Format
    uBAM is a variant form of the BAM file format in which the read data does not...
  • Mate unmapped records
    Mate unmapped records are identifiable by the 8 SAM flag. It is possible for...
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Algorithms

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Note that the information in this documentation guide is targeted at end-users. For developers, the source code and related resources are available on GitHub.