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Yi Huang

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Latest activity by Yi Huang
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    Yi Huang commented,

    1. Community
    2. Somatic
    3. Mutect2 cannot generate stats file and f1r2.tar.gz file

    My entire program file: 15:46:33.133 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/huangyi/anaconda/share/gatk4-4.2.6.1-1/gatk-package-4.2.6.1-local.jar!/com/intel/g...

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    Yi Huang created a post,

    Mutect2 cannot generate stats file and f1r2.tar.gz file

    Answered
    1. Community
    2. Somatic

    REQUIRED for all errors and issues: a) GATK version used:4.2.6.1 b) Exact command used: gatk Mutect2 -R $ref -L b37_Broad.human.exome.b37.interval_list -I $tumor1 -I $tumor2 -I $normal -normal W001...

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