Marta Giovalli
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Recent activity by Marta Giovalli Sort by recent activity-
Failure working with the tmp directory /tmp/
AnsweredHi, I've got this error but I do not understand the error since I do not ask for a tmp-dir. a) Using GATK jar /usr/bin/gatk-package-4.2.6.1-local.jar b) gatk --java-options -Xmx7g HaplotypeCaller ...
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libgkl_compression.so not found + Failed to detect Google Compute Engine in a GATK workflow
AnsweredI have got a problem with the workflow "GATK Broad Best Practice Germline snps and indels variant calling 4.1.0.0" available here. It is a workflow using GATK IntervalListTools, HaplotypeCaller + M...