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3. libgkl_compression.so not found + Failed to detect Google Compute Engine in a GATK workflow

Updating to the latest version of GATK (4.2.6.1) did the trick. Thank you!

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• Marta Giovalli
• September 26, 2022 16:22
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3. Failure working with the tmp directory /tmp/

Hi Genevieve, sorry for the late reply. The problem is that the docker container of the tool I need to execute is created with a read-only file-sys. Using the option --tmp-dir as you suggested did ...

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• Marta Giovalli
• September 26, 2022 16:14
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