Theresa Saunders

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Latest activity by Theresa Saunders
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    Theresa Saunders commented,

    Well, haha I figured out where everything was going wrong, and it was a really simple fix. In my original command, I just had to replace the & with ||.  Original: gatk VariantFiltration -R rorida_q...

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    Theresa Saunders commented,

    Update: The problem seems to somehow be tied to the input file for the VariantFiltration step. In my case, it is Rorida_quinquenervia.SNPall.vcf. The VariantFiltration fails as soon as it come to a...

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    Theresa Saunders created a post,

    VariantFiltration issue


    Hello,  I am running into issues with my VariantFiltration step that stops without completing. It appears to work just fine and is able to identify 5 snps in the output file (all from the first 6 r...