Theresa Saunders
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Activity overview
Latest activity by Theresa Saunders-
Theresa Saunders commented,
Well, haha I figured out where everything was going wrong, and it was a really simple fix. In my original command, I just had to replace the & with ||. Original: gatk VariantFiltration -R rorida_q...
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Theresa Saunders commented,
Update: The problem seems to somehow be tied to the input file for the VariantFiltration step. In my case, it is Rorida_quinquenervia.SNPall.vcf. The VariantFiltration fails as soon as it come to a...
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Theresa Saunders created a post,
VariantFiltration issue
AnsweredHello, I am running into issues with my VariantFiltration step that stops without completing. It appears to work just fine and is able to identify 5 snps in the output file (all from the first 6 r...