Kresnodityo Jatiputro Widianto
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Latest activity by Kresnodityo Jatiputro Widianto-
Kresnodityo Jatiputro Widianto commented,
GNOMAD_GENOME="${REF}/gnomad.exomes.r2.1.sites.liftoverToHg38.INFO_ANNOTATIONS_FIXED.vcf.gz" gatk GetPileupSummaries \ -I ${INDIR}/${sn}.bqsr.bam \ -V ${GNOMAD_G...
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Kresnodityo Jatiputro Widianto created a post,
Plausibly incorrectly-calculated 'contamination' for select variants on multiple samples
AnsweredREQUIRED for all errors and issues: a) GATK version used: b) Exact command used: gatk Mutect2 \ -R /home/ref/BroadInstitute/Homo_sapiens_assembly38.fasta \ -I ${INDI...