Niharika
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SplitNCigar reads tool is not running
REQUIRED for all errors and issues: a) GATK version used:GATK v4.4.0.0b) Exact command used: gatk SplitNCigarReads -R SplitNCigar_Reads/human_genome.fna -I Mark_duplicates/PicardOutput/sorted_uniqu...
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GATK BQSR is taking too long to be run (running since last 6 days)
REQUIRED for all errors and issues: a) GATK version used: 4.0.5.1b) Exact command used:gatk BaseRecalibrator -I Alignment/SRR******_aln_pe_withRG.bam -R GATKBQSR/genome.fna --known-sites GATKBQSR/G...