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Duo Xie

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Latest activity by Duo Xie
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    Duo Xie commented,

    1. Community
    2. Somatic
    3. Issue when running BaseRecalibrator

    Hi Anthony Dias-Ciarla, Thank you for your work! I have given it a try and responded in the GitHub page: https://github.com/broadinstitute/gatk/issues/8005#issuecomment-1254561081   Best, Duo

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    Duo Xie created a post,

    Can Mutect2 calls tumor sample specific SNV under joint calling mode?

    1. Community
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    REQUIRED for all errors and issues: a) GATK version used: v4.2.6.1 b) Exact command used: see belowc) Entire program log: see below Hi, I want to ask whether Mutect2 can call tumor sample-specific ...

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    Duo Xie created a post,

    Issue when running BaseRecalibrator

    1. Community
    2. Somatic

    REQUIRED for all errors and issues: a) GATK version used:v4.2.6.1 b) Exact command used: see belowc) Entire program log: see belowHow can I assign a temp directory and won't get the bug? I always g...

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