Leslie Youtsey
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Latest activity by Leslie Youtsey-
Leslie Youtsey commented,
I couldnt add this to my post because I had reached the max number of characters. d) File output (head and tail of one file) contig position variantID refAllele altAllele refCounaltCount totalCou...
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Leslie Youtsey created a post,
ASEReadCount Only Outputting the First Chromosome
AnsweredREQUIRED for all errors and issues: a) GATK version used: b) Exact command used: c) Entire program log: REQUIRED for all errors and issues: a) GATK version used: GATK version used: gatk-4.2.6.1 b)...
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Leslie Youtsey commented,
That did the trick! Thanks Anthony DiCi. Sometimes it just takes a second eye to catch the small things. The table output looks good! But I have a second questions. In the table is the contig and ...
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Leslie Youtsey created a post,
ASEReadCounter outputting blank table
AnsweredUPDATED: When I run ASEReadCounter, it outputs blank table. I have tried adding AddOrReplaceReadGroups to my job based on other posts, but this did not work. Do you think it is my VCF file? What do...