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Nur Adlina Binti Mohd Affian

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Latest activity by Nur Adlina Binti Mohd Affian
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    Nur Adlina Binti Mohd Affian commented,

    Dear David,  I have successfully run the conversion of the data. However, I found there are a lot of duplicates found in the vcf file . Thus may I know how can I remove the duplicates? Is there any...

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    Nur Adlina Binti Mohd Affian commented,

    Hi GATK Team,  I am currently working on converting gtc to vcf file. However, there is an error appeared while doing it. Kindly advise me on this 

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    Nur Adlina Binti Mohd Affian created a post,

    Error in Running command GtcToVcf

    REQUIRED for all errors and issues: a) GATK version used: v4.4.0.0b) Exact command used: GtcToVcf -INPUT 206307460092_R07C01.gtc -REFERENCE_SEQUENCE hg19_v0_Homo_sapiens_assembly19.fasta -OUTPUT 20...

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    Nur Adlina Binti Mohd Affian created a post,

    Error in Running command CreateExtendedIlluminaManifest

    Answered

    Hi GATK team,  I am currently generating the extended manifest file using CreateExtendedIlluminaManifest in order to use GtcToVcf (Picard) for converting gtc file to vcf. However, while running Cre...