Nur Adlina Binti Mohd Affian
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Activity overview
Latest activity by Nur Adlina Binti Mohd Affian-
Nur Adlina Binti Mohd Affian commented,
Hi Genevieve Brandt (she/her) , I found that this question have been resolve as I also facing the same error while running the script with GRCh38 reference. May I know, is there any alternative app...
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Nur Adlina Binti Mohd Affian created a post,
Picard LiftOverVCF 100.0000% of variants were not successfully lifted over
Dear GATK team, I am currently running LiftoverVcf paramter to do a liftover from hg19 to hg38 on the normalize vcf file generated via "GtcToVcf" parameter. Upon running the script, I find out tha...
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Nur Adlina Binti Mohd Affian commented,
Dear David, I have successfully run the conversion of the data. However, I found there are a lot of duplicates found in the vcf file . Thus may I know how can I remove the duplicates? Is there any...
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Nur Adlina Binti Mohd Affian commented,
Hi GATK Team, I am currently working on converting gtc to vcf file. However, there is an error appeared while doing it. Kindly advise me on this
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Nur Adlina Binti Mohd Affian created a post,
Error in Running command GtcToVcf
REQUIRED for all errors and issues: a) GATK version used: v4.4.0.0b) Exact command used: GtcToVcf -INPUT 206307460092_R07C01.gtc -REFERENCE_SEQUENCE hg19_v0_Homo_sapiens_assembly19.fasta -OUTPUT 20...
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Nur Adlina Binti Mohd Affian created a post,
Error in Running command CreateExtendedIlluminaManifest
AnsweredHi GATK team, I am currently generating the extended manifest file using CreateExtendedIlluminaManifest in order to use GtcToVcf (Picard) for converting gtc file to vcf. However, while running Cre...