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Joshua Burdick

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Latest activity by Joshua Burdick
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    Joshua Burdick commented,

    1. Getting Started
    2. Best Practices Workflows
    3. RNAseq short variant discovery (SNPs + Indels)

    We're planning to use this workflow, but (like some others) would like to use GRCh38. Are there plans to adapt the workflow for that? (I realize that GRCh38 has more contigs than GRCh37, so this ma...

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    • Joshua Burdick
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    Joshua Burdick commented,

    1. Tool Index
    2. 4.1.4.1
    3. HaplotypeCaller

    I think that there may be a typo in the "Single-sample GVCF calling with allele-specific annotations" section. It suggests the options "-G Standard -G AS_Standard". However, when using those, I get...