Jakub Savara
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Activity overview
Latest activity by Jakub Savara-
Jakub Savara created a post,
HaplotypeCaller vs UnifiedGenoTyper (SNPs at the end of single read)
Hello, I have question regarding calling of SNPs at the end of read. We do amplicon sequencing. We are normally using combination of HaplotypeCaller and UnifiedGenotyper but we would like to use on...
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Jakub Savara commented,
Hi Genevieve, thank you very much for your answer and explanation. I would appreciate if this could be mentioned in the tool description, as it has been discussed on various forums and most other t...
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Jakub Savara commented,
Thank you very much! I just wanted to be sure, since e.g. bedtools requires name sorted bam. However, I tried SamToFastq (GATK) for both coordinate and name sorted bam (paired) and the read count i...
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Jakub Savara created a post,
SamToFastq - bam order
AnsweredSamToFastq tool: Can we use as input coordinate and also name sorted bam? Thanks.