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Robin Mjelle

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Latest activity by Robin Mjelle
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    Robin Mjelle created a post,

    Combine two panel-of-normals files

    Answered
    1. Community
    2. Somatic

    Hi, I have made a PON from my normal samples and want to combine this with the PON from GATK. Is this possible? Or any other way of using both when running mutect2?

    • Robin Mjelle
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    Robin Mjelle created a post,

    CalculateContamination inputs for paired tumor-normal data

    Answered
    1. Community
    2. General Discussion

    REQUIRED for all errors and issues: a) GATK version used: 4.2.2.0   I am running mutect2 in tumor-normal mode which gives ONE output file. I am puzzled by which inputs I should use for CalculateCon...

    • Robin Mjelle
    • 3 followers
    • 2 comments
    • 0 votes