Robin Mjelle

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Latest activity by Robin Mjelle
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    Robin Mjelle created a post,

    Combine two panel-of-normals files


    Hi, I have made a PON from my normal samples and want to combine this with the PON from GATK. Is this possible? Or any other way of using both when running mutect2?

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    Robin Mjelle created a post,

    CalculateContamination inputs for paired tumor-normal data


    REQUIRED for all errors and issues: a) GATK version used:   I am running mutect2 in tumor-normal mode which gives ONE output file. I am puzzled by which inputs I should use for CalculateCon...