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Tommy Phannareth

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Latest activity by Tommy Phannareth
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    Tommy Phannareth created a post,

    HaplotypeCaller calling whole chromosome as NON_REF

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    v4.2.0.0  gatk HaplotypeCaller \-R ${REFERENCE}.fa \-L ${INTERVAL} \-I ${BAMPATH} \-ERC GVCF \-O $TMPDIR/${SAMPLE}.${INTERVAL}.chrom.g.vcf \> slurm_out/${SAMPLE}.${INTERVAL}.log 2>&1   Using GATK j...

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