AB
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Latest activity by AB-
AB commented,
Thank you!
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AB commented,
Hi Genevieve Brandt (she/her), After you pointed out about the TEMP folder which GATK uses for SQLite, I ran Funcotator using --tmp-dir flag and got it running. Thank you!
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AB commented,
Hi Genevieve Brandt (she/her), I am working on broad institute server, so I have not installed gatk(as root). I have been using it just by extracting the latest release and running the executable. ...
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AB commented,
Hi Genevieve Brandt (she/her),I am using a remote server which is running RedHat 7.7 SQLite version: 3.32.3 (Installed using conda) libc version: 2.17Thank you.
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AB created a post,
Funcotator: Unable to open SQLite DB for COSMIC
Answereda) GATK version used: GATK-4.2.6.1b) Exact command used: gatk-4.2.6.1/gatk Funcotator \-R Homo_sapiens_assembly19.fasta \-V 1170_mutect2/1170_filtered.vcf.gz \-O 1170_mutect2/1170.maf \--output-f...